Software
  1. GAME: genetic algorithm based motif elicitation
  2. Searching for evolutionary distant RNA homologs within large genomic sequences
  3. Recursive-iterative-DCM3 for large scale phylogeny reconstruction
  4. Probalign for multiple sequence alignment
  5. Sdiscover: finding active motifs in a set of protein or DNA sequences
  6. RSmatch/RADAR: aligning RNA secondary structures and finding RNA motifs