|
2009
|
|
|
|
2008
|
-
Zhi Wei,
M. Li, T. Rebeck and H. Li.
U-statistics-based tests for multiple genes
in genetic association studies.
Annals of Human Genetics, 72:821-833, 2008.
-
Zhi Wei and Hongzhe Li.
A hidden spatial-temporal Markov random field model for
network-based analysis of time course gene expression data.
Annals of Applied Statistics, 2:408-429, 2008.
-
Usman Roshan, Satish Chikkagoudar and Dennis R. Livesay.
Searching for evolutionary distant RNA homologs within
genomic sequences using partition function posterior
probabilities.
BMC Bioinformatics,
9:61, 2008.
-
Mugdha Khaladkar, Jianghui Liu, Dongrong Wen,
Jason T. L. Wang and Bin Tian.
Mining small RNA structure elements
in untranslated regions of human and mouse
mRNAs using structure-based alignment.
BMC Genomics, 9:189, 2008.
-
Mugdha Khaladkar, Vandanaben Patel, Vivian Bellofatto,
Jeffrey Wilusz and Jason T. L. Wang.
Detecting conserved secondary structures in RNA
molecules using constrained structural alignment.
Computational Biology and Chemistry,
32:264-272, 2008.
-
Sen Zhang and Jason T. L. Wang.
Discovering frequent agreement subtrees from phylogenetic data.
IEEE Transactions on Knowledge and Data Engineering,
20(1):68-82, 2008.
|
|
2007
|
-
Zhi Wei and Hongzhe Li.
A Markov random field model for network-based analysis of
genomic data.
Bioinformatics,
23(12):1537-1544, 2007.
-
Zhi Wei and Hongzhe Li.
Nonparametric pathway-based regression models for analysis of
genomic data.
Biostatistics,
8(2):265-284, 2007.
-
Marc Q. Ma, Kai Zhang, Hui-Yun Wang and Frank Y. Shih.
ELB-Q, a new method for improving the robustness
in DNA microarray image quantification.
IEEE Transactions on Information Technology in Biomedicine,
11(5):574-582, 2007.
-
Dennis R. Livesay, Patrick D. Kidd, Sepehr Eskandari and Usman Roshan.
Assessing the ability of sequence-based methods to provide functional insight
within membrane integral proteins: a case study analyzing the
neurotransmitter/Na+ symporter family.
BMC Bioinformatics,
8:397, 2007.
-
Satish Chikkagoudar, Usman Roshan and Dennis Livesay.
eProbalign: generation and manipulation of multiple sequence alignments
using partition function posterior probabilities.
Nucleic Acids Research,
35(Web Server issue):W675-W677, 2007.
-
Mugdha Khaladkar, Vivian Bellofatto, Jason T. L. Wang,
Bin Tian and Bruce A. Shapiro.
RADAR: a web server for RNA data analysis and research.
Nucleic Acids Research,
35(Web Server issue):W300-W304, 2007.
|
|
2006
|
-
Zhi Wei and Shane T. Jensen.
GAME: detecting cis-regulatory elements
using a genetic algorithm.
Bioinformatics,
22(13):1577-1584, 2006.
-
Yuri Dotsenko, Cristian Coarfa, Luay Nakhleh, John Mellor-Crummey
and Usman Roshan.
PRec-I-DCM3:
a parallel framework for fast and accurate large scale phylogeny
reconstruction.
International Journal on Bioinformatics Research and
Applications,
2(4):407-419, 2006.
-
Quanzhi Li and Yi-fang Brook Wu.
Identifying
important concepts from medical documents.
Journal of Biomedical Informatics, 39(6):668-679, 2006.
-
Usman Roshan and Dennis R. Livesay.
Probalign: multiple sequence alignment using partition
function posterior probabilities.
Bioinformatics,
22(22):2715-2721, 2006.
-
Jason T. L. Wang and Xiaoming Wu.
Kernel design for RNA classification
using support vector machines.
International Journal of Data Mining and
Bioinformatics, 1:57-76, 2006.
|
|
2005
|
-
Zhihua Du, Feng Lin and Usman Roshan.
Reconstruction of large phylogenetic trees: a parallel
approach.
Computational Biology and Chemistry, 29(4):273-280, 2005.
-
Jason T. L. Wang, Huiyuan Shan, Dennis Shasha and William H. Piel.
Fast
structural search in phylogenetic databases.
Evolutionary Bioinformatics,
1:37-46, 2005.
-
Jianghui Liu, Jason T. L. Wang, Jun Hu and Bin Tian.
A method for aligning RNA
secondary structures and its application to RNA motif detection.
BMC Bioinformatics, 6:89, 2005.
| |